ÿþ<html> <head> <title>Center for Grid Research Development--Event--</title> <!--keywords of this site for search//--> <meta name="keywords" content="Center for GRID Research Development"> <!--description of this site for search//--> <meta name="description" content="This is the official site of Center for GRID Research Development."> <meta http-equiv="Content-Type" content="text/html; charset=Shift_JIS"> <meta http-equiv="Content-Style-Type" content="text/css"> <link rel="stylesheet" href="../default.css" type="text/css"> <script> <!-- var point=4; //--> </script> </head> <body topmargin="0" marginwidth="0" marginheight="0" leftmargin="0" bgcolor="#ffffff" background="../images/menu_bg.gif"><a name="top"></a> <table width="740" border="0" cellpadding="0" cellspacing="0"> <tr> <td colspan="2" height="104"> <img src="../images/n_eng_01.gif" width="740" height="104"><br> </td> </tr> <tr> <!--menu//--> <td valign="top" width="151" align="center"> <script language="JavaScript" src="../menu_e.js"></script> <noscript>Please enable Javascript in your browser to browse this website.</noscript> </td> <!--main//--> <td width="589" align="center" valign="top" > <br> <table border="0" cellpadding="0" cellspacing="0" width="90%"> <tr> <td bgcolor="#99cccc"> <table bordre="0" cellpadding="1" cellspacing="2" width="100%" class="text12"> <tr> <td bgcolor="#ffffff"> <div align="center"><b>NAREGI Booth in SC05 (Booth#1127)</b></div> </td> </tr> </table> </td> </tr> </table> <br> <table width="90%" cellpadding="0" cellspacing="0" class="text12"> <tr> <td> We will have a NAREGI booth at SC2005 which will be held November 12-18, 2005, in Seattle, WA. For the last two years NAREGI, a Japanese national Grid R&D project, has been developing a wide range of production-level software including infrastructure-level middleware, client/user-level tools and applications. <br><br> The highlights of NAREGI software include:<br> - An incarnation of OGSA-EMS's resource and job management<br> - Reservation based co-allocation of MPI jobs across multiple sites<br> - Ease of use of NAREGI middleware and client/user tools for developing<br> large-scale grid applications e.g., nano-science coupled simulation <br><br> You are cordially welcome to stop by our NAREGI booth (#1127) on November 14-17, where you will be able to see hand-on demos, talking and asking questions, if any, to NAREGI technical staff members. </td> </tr> </table> <br> <table width="570" cellpadding="5" cellspacing="5" class="text10"> <tr> <td align="center"> <table border="0" cellpadding="0" cellspacing="0" width="100%" class="text12"> <tr> <td bgcolor="#ffffff"> <div align="center"><b>SC/05 NAREGI Demonstration Program(Booth#1127)</b></div> </td> </tr> </table> </td> </tr> </table> <table width="590" cellpadding="0" cellspacing="0" border="0"> <tr> <td align="center"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td colspan="5"><hr noshade width="95%"> </td> </tr> <tr> <td width="60" height="30" align="center" valign="middle" class="text10">1</td> <td width="80" align="left" valign="middle" class="text10">10:40 - 10:55</td> <td width="80" align="right" valign="middle" class="text10">13:40 - 13:55</td> <td><img src="images/spacer.gif" width="30" alt=""></td> <td width="340" align="left" valign="middle" class="text12"><b>NAREGI Overview</b><br><small>Dr. Kenichi Miura (National Institute of Informatics)</small></td> </tr> <tr> <td colspan="5"><hr noshade width="95%"> </td> </tr> <tr> <td width="60" height="30" align="center" valign="middle" class="text10">2</td> <td width="80" align="left" valign="middle" class="text10">11:00 - 11:15</td> <td width="80" align="right" valign="middle" class="text10">14:00 - 14:15</td> <td><img src="images/spacer.gif" width="30" alt=""></td> <td width="340" align="left" valign="middle" class="text12"><b>NAREGI Middleware online Demonstration</b><br><small>Dr. Satoshi Matsuoka (Tokyo Institute of Technology / NII)</small></td> </tr> <tr> <td colspan="5"><hr noshade width="95%"> </td> </tr> <tr> <td width="60" height="30" align="center" valign="middle" class="text10">3</td> <td width="80" align="left" valign="middle" class="text10">11:20 - 11:35</td> <td width="80" align="right" valign="middle" class="text10">14:20 - 14:35</td> <td><img src="images/spacer.gif" width="30" alt=""></td> <td width="340" align="left" valign="middle" class="text12"><b>Grid-enabling of GAMESS-FMO program</b><br><small>Dr. Mutsumi Aoyagi (Kyushu Univ.) </small></td> </tr> <tr> <td colspan="5"><hr noshade width="95%"> </td> </tr> <tr> <td width="60" height="30" align="center" valign="middle" class="text10">4</td> <td width="80" align="left" valign="middle" class="text10">11:40 - 11:55</td> <td width="80" align="right" valign="middle" class="text10">14:40 - 14:55</td> <td><img src="images/spacer.gif" width="30" alt=""></td> <td width="340" align="left" valign="middle" class="text12"><b>Application to Soft Nanoscience</b><br><small>Dr. Akihiro Morita (Institute for Molecular Science) </small></td> </tr> <tr> <td colspan="5"><hr noshade width="95%"> </td> </tr> <tr> <td width="60" height="30" align="center" valign="middle" class="text10">5</td> <td width="80" align="left" valign="middle" class="text10">12:00 - 12:15</td> <td width="80" align="right" valign="middle" class="text10">15:00 - 15:15</td> <td><img src="images/spacer.gif" width="30" alt=""></td> <td width="340" align="left" valign="middle" class="text12"><b>Data Integration of Scientific Databases</b><br><small>Dr. Hideo Matsuda (Osaka Univ.)</small></td> </tr> <tr> <td colspan="5"><hr noshade width="95%"> </td> </tr> <tr> <td width="60" height="30" align="center" valign="middle" class="text10">6</td> <td width="80" align="left" valign="middle" class="text10"></td> <td width="80" align="right" valign="middle" class="text10"></td> <td><img src="images/spacer.gif" width="30" alt=""></td> <td width="340" align="left" valign="middle" class="text12"><b>Coupled Simulation using NAREGI a Version</b><br><small>During intermission of above demonstrations</small></td> </tr> <tr> <td colspan="5"><hr noshade width="95%"> </td> </tr> <tr> <td width="60" height="30" align="center" valign="middle" class="text10">7</td> <td width="80" align="left" valign="middle" class="text10"></td> <td width="80" align="right" valign="middle" class="text10"></td> <td><img src="images/spacer.gif" width="30" alt=""></td> <td width="340" align="left" valign="middle" class="text12"><b>Demonstrations of GridMPI and GridRPC</b><br><small>are taking place at the AIST booth(# 723 ).</small></td> </tr> <tr> <td colspan="5"><hr noshade width="95%"> </td> </tr> </table> <table table width="95%" cellpadding="0" cellspacing="0" border="0"> <tr> <td align="left" class="text10"><b>1) NAREGI Overview</b><br>The goal of NAREGI is to develop grid middleware for widely-distributed computing resources in advanced research and education. The NAREGI project involves participation by industry, academia, and government institutions. Based on success in building a science grid environment, the project is launching a cyber-science infrastructure to promote R&D in various scientific fields. </td> </tr> <tr> <td><img src="images/spacer.gif" height="10" alt=""></td> </tr> <tr> <td align="left" class="text10"><b>2) NAREGI Middleware online demonstration</b><br>NAREGI resource management middleware is one of the world first reference implementations of GGF/OGSA(TM)-EMS architecture. It supports automatic resource brokering and reservation based co-allocation, which makes it easier for users to run complex jobs that require running on across systems on different sites. In this demonstration, we explain the architecture and how it works with a simple MPI job.0(OGSA is trademark of Global Grid Forum) </td> </tr> <tr> <td><img src="images/spacer.gif" height="10" alt=""></td> </tr> <tr> <tr> <td align="left" class="text10"><b>3) Grid-enabling of GAMESS-FMO program</b><br>To execute nano applications more efficiently on the grid environment, we decomposed a FMO program into modules to make computational units loosely coupled each other. Each module can use the appropriate computer resource on the grid environment, which the NAREGI middleware selects. We have carried out the calculation on the serum albumin molecule (18,242atoms) on the NAREGI grid environment with Loosely Coupled FMO. </td> </tr> <tr> <td><img src="images/spacer.gif" height="10" alt=""></td> </tr> <tr> <tr> <td align="left" class="text10"><b>4) Application to Soft Nanoscience</b><br>A variety of combinations of different computational techniques can be realized in the grid environment. Here two examples are demonstrated in the soft nanoscience: <br> (1) MD (molecular dynamics)-MO (molecular orbital) combination, <br> (2) replica MC (Monte Carlo)  RISM (reference interaction site model) combination.These techniques are quite powerful to study chemical reaction mechanisms and structures of biopolymers in water. </td> </tr> <tr> <td><img src="images/spacer.gif" height="10" alt=""></td> </tr> <tr> <tr> <td align="left" class="text10"><b>5) Data Integration of Scientific Databases</b><br>A large number of databases are available in life sciences, astronomy, etc. Using our Data Grid environment, the data integration of those DBs is performed as: (1) construct metadata for associating all the related data in the DBs, (2) connect the DBs and the metadata, (3) describe dataflow for querying across the DBs, and (4) deploy engines on the environment and execute the dataflow. </td> </tr> <tr> <td><img src="images/spacer.gif" height="10" alt=""></td> </tr> <tr> <tr> <td align="left" class="text10"><b>6) Coupled Simulation using NAREGI alpha Version</b><br>This demonstration shows the usage for end users and the internal mechanism of NAREGI grid, by taking a practical and somewhat complex case: large-scale RISM*1-FMO*2 coupled simulation for analysis of electronic structure of protein Lysozyme in water. It is executed as a heterogeneous parallel MPI job on a large number of automatically selected computing resources across multiple sites. <br>*1 Reference Interaction Site Model *2 Fragment Molecular Orbital Method </td> </tr> <tr> <td><img src="images/spacer.gif" height="10" alt=""></td> </tr> <tr> </table> </td> </tr> </table> <div class="pagetop" align="right"> <br> <a href="#top">[ page top ]</a> </div> <!--copyrights//--> <div class="copy" align="right"> <br> Copyright(C)2003-2005.NII.All Rights Reserved. </div> <!--copyrights//--> </td> </tr> </table> </body> </html>